Dataset on Bi- and Multi-Nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors

作者: | Christof A. Bertram | Taryn A. Donovan | Marco Tecilla | Florian Bartenschlager | Marco Fragoso | Frauke Wilm | Christian Marzahl | Katharina Breininger | Andreas Maier | Robert Klopfleisch | Marc Aubreville |

摘要:Tumor cells with two nuclei (binucleated cells, BiNC) or more nuclei (multinucleated cells, MuNC) indicate an increased amount of cellular genetic material which is thought to facilitate oncogenesis, tumor progression and treatment resistance. In canine cutaneous mast cell tumors (ccMCT), binucleation and multinucleation are parameters used in cytologic and histologic grading schemes (respectively) which correlate with poor patient outcome. For this study, we created the first open source data-set with 19,983 annotations of BiNC and 1,416 annotations of MuNC in 32 histological whole slide images of ccMCT. Labels were created by a pathologist and an algorithmic-aided labeling approach with expert review of each generated candidate. A state-of-the-art deep learning-based model yielded an F1 score of 0.675 for BiNC and 0.623 for MuNC on 11 test whole slide images. In regions of interest (2.37mm2) extracted from these test images, 6 pathologists had an object detection performance between 0.270 - 0.526 for BiNC and 0.316 - 0.622 for MuNC, while our model archived an F1 score of 0.667 for BiNC and 0.685 for MuNC. This open dataset can facilitate development of automated image analysis for this task and may thereby help to promote standardization of this facet of histologic tumor prognostication.

论文地址

https://arxiv.org/abs/2101.01445v1

下载地址

https://arxiv.org/pdf/2101.01445v1.pdf

全部源码

https://github.com/DeepPathology/CCMCT_Bi_Multinucleated

object detection whole slide images

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Dataset on Bi- and Multi-Nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors